Cancer Genome Workbench - Produced by CBIIT/ National Cancer Institute / NIH / Bethesda Maryland - based on UCSC Genome Browser Navigation Skip (508)
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Cancer Genome Workbench based on UCSC Genome Browser on Human Mar. 2006 (NCBI36/hg18)
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chrX:151,073,054-151,383,976 310,923 bp.
Chromosome Ideogram
side_ruler
data_ruler
side_knownGene
center_knownGene
data_knownGene
side_refGene
center_refGene
data_refGene
side_mrna
center_mrna
data_mrna
side_intronEst
center_intronEst
data_intronEst
side_snp130
center_snp130
data_snp130
side_rmsk
center_rmsk
data_rmsk
side_Mapability
center_Mapability
data_Mapability
side_motif
center_motif
data_motif
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  Click on a feature for details. Click or drag in the base position track to zoom in. Click side bars for track options. Drag side bars or labels up or down to reorder tracks. Drag tracks left or right to new position.   move end
  
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Tracks with lots of items will automatically be displayed in more compact modes.
-   Mapping and Sequencing Tracks
Base Position
Chromosome Band
STS Markers
FISH Clones
Recomb Rate
Map Contigs
Assembly
Gap
Coverage
BAC End Pairs
Fosmid End Pairs
GC Percent
Short Match
Restr Enzymes
-   Phenotype and Disease Associations
GAD View
GWAS Catalog
RGD Human QTL
RGD Rat QTL
MGI Mouse QTL
-   Genes and Gene Prediction Tracks
UCSC Genes
Alt Events
CCDS
RefSeq Genes
Other RefSeq
MGC Genes
ORFeome Clones
TransMap...
Vega Genes
Ensembl Genes
AceView Genes
SIB Genes
N-SCAN
CONTRAST
SGP Genes
Geneid Genes
Genscan Genes
Exoniphy
Augustus
RNA Genes
tRNA Genes
ACEScan
EvoFold
sno/miRNA
Pos Sel Genes
-   mRNA and EST Tracks
Human mRNAs
Spliced ESTs
Human ESTs
Other mRNAs
Other ESTs
H-Inv
UniGene
Gene Bounds
SIB Alt-Splicing
Poly(A)
CGAP SAGE
-   Expression and Regulation
CpG Islands
Eponine TSS
FirstEF
GIS ChIP-PET
ORegAnno
SwitchGear TSS
TFBS Conserved
TS miRNA sites
Vista Enhancers
7X Reg Potential
LI/UCSD TAF1...
NKI Nuc Lamina...
Uppsala ChIP...
-   Comparative Genomics
28-Way Cons
28-Way Most Cons
17-Way Cons
17-Way Most Cons
Cons Indels MmCf
Tetraodon Ecores
Chimp Chain/Net
Orangutan Chain/Net
Rhesus Chain/Net
Marmoset Chain/Net
Guinea pig Chain/Net
Rat Chain/Net
Mouse Chain/Net
Dog Chain/Net
Cat Chain/Net
Horse Chain/Net
Cow Chain/Net
Opossum Chain/Net
Platypus Chain/Net
Lizard Chain/Net
Chicken Chain/Net
X. tropicalis Chain/Net
Zebrafish Chain/Net
Stickleback Chain/Net
Fugu Chain/Net
Tetraodon Chain/Net
Lamprey Chain/Net
Lancelet Chain/Net
S. purpuratus Chain/Net
-   Variation and Repeats
SNPs (130)
SNPs (129)
SNPs (128)
SNPs (126)
Agilent Array
SNP Arrays
HapMap SNPs
HapMap LD Phased
[No data-chrX]
Tajima's D SNPs
Tajima's D
DGV Struct Var
Segmental Dups
Structural Var
Exapted Repeats
RepeatMasker
RepMask 3.2.7
Interrupted Rpts
Simple Repeats
Microsatellite
Self Chain
-   Cancer Genome Workbench - Utility Tracks
Mapability
motifs
-   Cancer Genome Workbench - TCGA Array Data
TCGA_BLCA_Integrated
TCGA_BRCA_Integrated
TCGA_CESC_Integrated
TCGA_COAD_Integrated
TCGA_GBM_Integrated
TCGA_HNSC_Integrated
TCGA_KIRC_Integrated
TCGA_KIRP_Integrated
TCGA_LAML_Integrated
TCGA_LGG_Integrated
TCGA_LUAD_Integrated
TCGA_LUSC_Integrated
TCGA_OV_Integrated
TCGA_PRAD_Integrated
TCGA_READ_Integrated
TCGA_STAD_Integrated
TCGA_LIHC_Integrated
TCGA_THCA_Integrated
TCGA_UCEC_Integrated
-   Cancer Genome Workbench - TCGA Next Gen Sequencing
TCGAGBM_NG_Capture
TCGAGBM_NG_Whole
TCGAOV_NG_Whole
TCGAOV_NG_Capture
TCGA_COAD_NG_Exome
TCGA_COAD_NG_MIRNA
TCGA_COAD_NG_Whole_18
TCGA_KIRC_NG_Exome
TCGA_KIRC_NG_MIRNA
TCGA_LAML_NG_Capture
TCGA_LAML_NG_MIRNA
TCGA_LAML_NG_RNA
TCGA_LAML_NG_Whole
TCGA_LUAD_NG_MIRNA
TCGA_READ_NG_Exome
TCGA_READ_NG_MIRNA
TCGA_READ_NG_Whole
TCGA_UCEC_NG_MIRNA
-   Cancer Genome Workbench - TCGA Prev Gen Sequencing and Regions
TCGABCM_GBM
TCGABCM_GBMPrimer
TCGAWIBR_GBMPrimer
TCGAWIBR_GBM
TCGAGSC_GBM_Valid
TCGAWUGSC_GBMPrimer
TCGAWUGSC_GBM
TCGAWUGSC_OvarianPrimer
TCGAWUGSC_Ovarian
TCGAWIBR_OvarianPrimer
TCGAWIBR_Ovarian
TCGABCM_OvarianPrimer
TCGABCM_Ovarian
-   Cancer Genome Workbench - TARGET
TARGET_ALLPrimer
[No data-chrX]
TARGET_NBL_Integrated
TARGET_ALL_Integrated
+   Cancer Genome Workbench - TSP
-   Cancer Genome Workbench - COSMIC
COSMIC_adrenal
[No data-chrX]
COSMIC_biliary
[No data-chrX]
COSMIC_blood
COSMIC_bone
[No data-chrX]
COSMIC_breast
COSMIC_CNS
COSMIC_cervix
[No data-chrX]
COSMIC_CRC
COSMIC_oesophagus
[No data-chrX]
COSMIC_eye
[No data-chrX]
COSMIC_HN
COSMIC_kidney
COSMIC_liver
[No data-chrX]
COSMIC_lung
COSMIC_meninges
[No data-chrX]
COSMIC_NS
[No data-chrX]
COSMIC_ovary
COSMIC_pancreas
COSMIC_parathyroid
[No data-chrX]
COSMIC_pituitary
[No data-chrX]
COSMIC_pleura
COSMIC_prostate
[No data-chrX]
COSMIC_skin
COSMIC_small_intestine
[No data-chrX]
COSMIC_soft_tissue
[No data-chrX]
COSMIC_stomach
COSMIC_testis
[No data-chrX]
COSMIC_thyroid
[No data-chrX]
COSMIC_urinary_tract
COSMIC_endometrium
[No data-chrX]
-   Cancer Genome Workbench - JenLab
JenLabPrimer
[No data-chrX]
JenLab
[No data-chrX]
-   Cancer Genome Workbench - Johns_Hopkins
JHU_GBM
JHU_Bova
JHU_pancreas
-   Cancer Genome Workbench - Miscellaneous Tracks
MIT_NG_RNA
UChicago_NG_RNA
-   Cancer Genome Workbench - LPG
LiverCancer_CopyNumber
-   Cancer Genome Workbench - GSK_Cell_Lines
GSK_Bladder
GSK_Blood
GSK_Bone
GSK_Brain
GSK_Breast
GSK_CNS
GSK_Cervix
GSK_Colon
GSK_Connective_Tissue
GSK_Esophagus
GSK_Eye
GSK_Kidney
GSK_Liver
GSK_Lung
GSK_Muscle
GSK_Ovary
GSK_Pancreas
GSK_Pharynx
GSK_Placenta
GSK_Prostate
GSK_Rectum
GSK_Sarcoma
GSK_Skin
GSK_Stomach
GSK_Synovium
GSK_Thyroid
GSK_Uterus
GSK_Vulva
-   other
BCACPrimer
[No data-chrX]
OCACPrimer
[No data-chrX]
OCAC
[No data-chrX]
MGC Genes
NCI60
Rembrandt
VU_NL
Affy GNF1H
Affy U133
Affy U133Plus2
Affy U95
Allen Brain
Bertone Yale TAR
GIS PET RNA
GNF Atlas 2
GNF Ratio
Affy Txn...